ABF to HDF5 Batch Converter
🧬 Got a folder full of .abf files and no time to sort them?
This tool batch-converts your Axon .abf recordings into clean, concatenated HDF5 files—complete with time axis and metadata. Perfect for analysis, ML pipelines, or just escaping pClamp forever.
âś… Concatenates all sweeps
âś… Exports full signal + adjusted time
âś… Stores experiment protocol, sampling rate, channels, and notes
âś… Fully compatible with NumPy, MATLAB, Python, and more
đź“‚ Input: A folder of .abf files
🧪 Output: A clean .h5 file per recording with all sweeps concatenated
No GUI. No nonsense. Just run the script and get your data.
• ⚙️ abf_to_h5_converter.py — Full-featured Python script • 📄 README.md — Quickstart guide and file format overview • 🧠Research-grade, no-friction export tool • 🧪 Ideal for neuroscience, electrophysiology, ML, and signal analysis